PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 609aa    MW: 68559.2 Da    PI: 5.2734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13338383555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     + ++ErrRR+++N+++  Lr+l+Pk +      Kl+ a+iL  A++Y+k+Lq
  XP_010548100.1 338 NLMAERRRRKKLNDRLYALRSLVPKiS------KLDRASILGDAINYVKELQ 383
                     5589*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-1811161IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.412333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-14335384No hitNo description
SuperFamilySSF474592.36E-17336395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-11338383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16340395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MESTMQNLLG KLRSLVGTRG WDYCVLWKLS DDQRFVKWLG CCCGGAEEII SNLDCNNNGG  60
EGFCFSGDVP SSCRDVMFHH PRTKSCELLA NLPVSIPLES GIHAETLVSN QTAWLNFLDR  120
SEPEFRQEIT CTRVLIPVPG GLVELFVTRQ VSEDQHVVDF VMGECNFLLD HTSTGALSMN  180
MMGAEEVESK PYEISGGFDH KGAKEDMNLS YDQQIRLNFL PQLGEYEAEH IKMKNDYHGL  240
GFLPENKQMD MNPFNSVVAE DEIAGMEALH NSMEAGAMDM HNVEGCDPSL LVKEQHDKET  300
FSHENGRLDS GSDCSDQMDD DDDAKFKKKT GKGSQAKNLM AERRRRKKLN DRLYALRSLV  360
PKISKLDRAS ILGDAINYVK ELQNEAKELQ EELEENLDTD DGSNRHNGNA AIGGNNDLVK  420
GFHSGLSCNT TNVPNLKQDM DHDQSSNEKG QEMEPQVDVA QVDGKEFFVK VICEYKPGGF  480
TKLMEAMDSL GLEVTNANTT RFLGLVSNVF KVERKDSEMV QAEHVRDSLL EITRNTSRGW  540
HGGGDDDDQM GNVDKNGVEY HQNYDNHHGH GHGVHHHLHD HQINQDMSSP HHHHHLLHHH  600
HIHHYHNQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326347KKKTGKGSQAKNLMAERRRRKK
2341348ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548100.10.0PREDICTED: transcription factor ABORTED MICROSPORES
RefseqXP_010548101.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLV4LJU20.0V4LJU2_EUTSA; Uncharacterized protein
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein